Pipeline-Agnostic Input & Seqera Studio Integration
You spent hours running your secondary analysis pipeline. Your variant calling completed successfully, you've carefully annotated with your in-house databases, and your multi-sample VCF is ready for analysis.
Then most analysis tools tell you:
The Problem
❌"Your in-house databases aren't supported"
❌"Re-annotate with our tool"
❌"Multi-sample VCFs aren't supported for analysis"
AIVA says: "Bring it all. We'll handle it."
AIVA's Solution
VCF from ANY pipeline. Sarek, GATK, DeepVariant, Dragen – they all work with AIVA without conversion.
Bring your annotations. VEP, SnpEff, bcftools and custom INFO/CSQ fields are parsed automatically so you never lose upstream context.
Multi-sample VCFs. Trios, cohorts and case–control studies are handled natively, not as an afterthought.
Seqera Studio integration. Run your pipeline and analyze with AIVA in the same environment.
1. Bring Your VCFs & Annotations
AIVA accepts VCFs from any pipeline and preserves all your annotations exactly as they are. No conversion, no re-annotation, no loss of data.
What AIVA Supports
Any pipeline. GATK, nf-core/sarek, DeepVariant, Dragen, nf-core/raredisease, or custom workflows.
Any format. Single or multi-sample VCFs, compressed (.vcf.gz) or uncompressed (.vcf).
Any annotations. VEP, SnpEff, custom INFO fields, and CSQ formats are all preserved.
Any location. Upload directly or import using signed URLs from cloud storage.
2. Seqera Studio Integration
Already using Seqera Platform for your bioinformatics pipelines? AIVA integrates directly into your workflow, enabling seamless transition from pipeline execution to clinical analysis.
How It Works
Run your pipeline. Execute any secondary analysis pipeline in Seqera Platform as you do today.
Mount your data. Access VCF files directly from your cloud storage bucket.
Launch AIVA Studio. Deploy AIVA with a single click using our prebuilt container.
Start analyzing. Import and analyze variants without moving data out of your environment.
Collaborate instantly. Share findings with your team in real time from the same workspace.
Container Image
gcr.io/aiva-b2387/aiva-chat-seqera:latest
From pipeline execution to clinical reporting - all in one integrated platform. No data transfer, no format conversion, no delays.
AIVA Seqera Studio Integration
Your Pipeline. Your Way.
Your bioinformatics team chose their pipeline for good reasons. Your in-house annotations are important for analysis. Your workflow is optimized for your specific needs.
AIVA respects that.
We don't force you to change your upstream processes. We don't require specific annotation tools. We don't lock you into proprietary formats.
Bring your VCF. Keep your annotations. Collaborate with your team. Start analyzing.
Get Started with AIVA
Ready to perform next-generation analysis with your next-generation data?
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