Most "AI Platforms" are just ML models. They rank variants, but they don't understand your case, run external tools, or even explain their reasoning.
AIVA is different.
While analyzing variants, AIVA agent has instant access to a comprehensive ecosystem of built-in tools for grounded information. AIVA is powered by SOTA LLMs and can also integrate custom tools via MCP seamlessly.
1. The Toolkit - Built-in Tools & MCP Integration
Built-in Tools Ready to Use
AIVA comes with a comprehensive toolkit for genomic analysis. Select the tools you need for each query or use them all.
📊 Data & Annotation Tools
→Database Queries — Query your parsed VCF data with optimized genomic filters
→AIVA-KG — Connections between Gene, disease, drugs, biological pathways and more
→Variant Annotations — Variant annotations from ClinVar, gnomAD, and more
→Literature review — Biomedical literature search with entity recognition
→Clinical Trials — Search ClinicalTrials.gov and NCI databases
→and more ...
Extend with Custom MCP Tools
Connect OSS tools like BioMCP using the Model Context Protocol (MCP): an open standard that lets AIVA access more relevant tools according to your analysis needs.
How It Works
1. Configure: Add your MCP server using simple JSON (same format as Claude Desktop)
2. Test Connection: Verify your server is accessible
3. Select Tools: Choose from available tools to enable/disable
4. Use Naturally: AIVA orchestrates built-in and custom tools through conversation
Connect proprietary databases, custom pipelines, or specialized analysis tools. No integration code required.
Built-in Tools & MCP Integration
2. Developer Integration - API Access & MCP Server
Take AIVA beyond the web interface. Use it programmatically via REST API or connect it as an MCP server to Claude and other AI assistants.
🔑 API Key Access
Generate API keys to access AIVA's genomic analysis capabilities from your terminal, scripts, or applications.
Quick Start
1. Create API Key: Go to Profile → API Keys → Create New Key
2. Copy Your Key: Save it securely (shown only once)
3. Use in Terminal: Make requests with Bearer token authentication
🔌 AIVA as MCP Server
Connect AIVA to Claude Desktop, Windsurf, or any MCP-compatible AI assistant. Access your data and AIVA's analysis tools through natural conversation.
Setup in 3 Steps
1. Get API Key: Create an API key from AIVA settings
2. Configure MCP Client: Add AIVA to your MCP client's config (Claude Desktop, Windsurf, etc.)
3. Start Using: Ask Claude to query your variants, search from our knowledge graph, or generate reports
AIVA as MCP Server in Claude
AIVA Adapts to Your Workflow
From web interface to terminal, from standalone tools to AI assistant integrations, AIVA works the way you work.
Choose Your Interface
Web Interface: Select from built-in tools, configure custom MCP integrations, all through a visual interface.
API Access: Automate workflows from your terminal, scripts, or applications with REST API.
MCP Server: Connect AIVA to Claude, Windsurf, or any MCP client. Access your data from your favorite AI assistant.
One platform, unlimited ways to use it.
Try AIVA Your Way
Start with the web interface, extend with custom tools, or integrate via API.